Index

A

adc_analysis() (trait2d.analysis.ListOfTracks method) (trait2d.analysis.Track method)

adc_summary() (trait2d.analysis.ListOfTracks method) add_model() (trait2d.analysis.ModelDB method) average() (trait2d.analysis.ListOfTracks method)

B

BrownianDiffusion (class in trait2d.simulators)

C

calculate_msd() (trait2d.analysis.Track method)

cleanup() (trait2d.analysis.ModelDB method)

D

delete_adc_analysis_results() (trait2d.analysis.Track method)

delete_msd_analysis_results() (trait2d.analysis.Track method) Diffusion (class in trait2d.simulators)

F

from_dataframe() (trait2d.analysis.Track class method) from_dict() (trait2d.analysis.Track class method)

from_file() (trait2d.analysis.ListOfTracks class method) (trait2d.analysis.Track class method)

G

get_adc_analysis_results() (trait2d.analysis.Track method) get_dapp() (trait2d.analysis.ListOfTracks method) get_estimated_size() (trait2d.simulators.movie_simulator method) get_id() (trait2d.analysis.Track method) get_model() (trait2d.analysis.ModelDB method) get_msd() (trait2d.analysis.ListOfTracks method) (trait2d.analysis.Track method) get_msd_analysis_results() (trait2d.analysis.Track method) get_msd_error() (trait2d.analysis.Track method)

get_msd_SEM() (trait2d.analysis.Track method) get_size() (trait2d.analysis.Track method) get_sublist() (trait2d.analysis.ListOfTracks method) get_t() (trait2d.analysis.Track method) get_track() (trait2d.analysis.ListOfTracks method) get_track_by_id() (trait2d.analysis.ListOfTracks method) get_tracks() (trait2d.analysis.ListOfTracks method) get_trajectory() (trait2d.analysis.Track method) get_x() (trait2d.analysis.Track method) get_y() (trait2d.analysis.Track method)

H

HoppingDiffusion (class in trait2d.simulators)

I

initialize() (trait2d.simulators.movie_simulator method)

is_msd_calculated() (trait2d.analysis.Track method)

L

ListOfTracks (class in trait2d.analysis) load_parameters() (trait2d.simulators.Diffusion method) load_psf() (trait2d.simulators.movie_simulator method)

load_tracks() (trait2d.simulators.movie_simulator method) LoadTrackIdNotFoundError LoadTrackMissingIdError

M

ModelBrownian (class in trait2d.analysis.models) ModelConfined (class in trait2d.analysis.models) ModelDB (class in trait2d.analysis) ModelHop (class in trait2d.analysis.models) ModelHopModified (class in trait2d.analysis.models) ModelImmobile (class in trait2d.analysis.models) ModelLinear (class in trait2d.analysis.models) ModelPower (class in trait2d.analysis.models)

module trait2d.analysis.models trait2d.exceptions trait2d.simulators movie_simulator (class in trait2d.simulators) msd_analysis() (trait2d.analysis.ListOfTracks method) (trait2d.analysis.Track method) MSDTrack (class in trait2d.analysis)

N

normalize() (trait2d.analysis.ListOfTracks method)

normalized() (trait2d.analysis.Track method)

P

plot_adc_analysis_results() (trait2d.analysis.Track method) plot_dapp() (trait2d.analysis.ListOfTracks method) plot_msd() (trait2d.analysis.ListOfTracks method) plot_msd_analysis_results() (trait2d.analysis.Track method)

plot_trajectories() (trait2d.analysis.ListOfTracks method) plot_trajectory() (trait2d.analysis.Track method) (trait2d.simulators.Diffusion method) print_parameters() (trait2d.simulators.Diffusion method)

R

remove_model() (trait2d.analysis.ModelDB method)

run() (trait2d.simulators.BrownianDiffusion method) (trait2d.simulators.movie_simulator method)

S

save() (trait2d.simulators.movie_simulator method)

save_parameters() (trait2d.simulators.Diffusion method) save_trajectory() (trait2d.simulators.Diffusion method)

T

Track (class in trait2d.analysis) trait2d.analysis.models module

trait2d.exceptions module trait2d.simulators module